plot a normlized hic map

shaman_golot_map_score

shaman_gplot_map_score(points_score, interval_range = NA, rotate = TRUE,
  point_size = 0.1, add_axis = TRUE)

Arguments

points_score	A dataframe containing the points (start1, start2) and their normalized score.
rotate	Binary flag, indicating if the plot should be rotated by 45 degrees.
point_size	Cex size of the points in the plot.
add_axis	Binary flag, indicating if axis should be added to plot.

Value

gplot containing the map

Details

Plots observerved hic contact matrix color-coded by normalized scores. Data can be either extracted directly from score track or computed via the functions: score_hic_mat, shuffle_and_score_hic_mat

Examples

#Set misha db to test
gsetroot(shaman_get_test_track_db())
points <- gextract("hic_score", gintervals.2d(2, 175e06, 178e06, 2, 175e06, 178e06), colnames="score")
shaman_gplot_map_score(points)