shaman_get_test_track_db Sets the current misha DB to the example database provided with shaman. In the example misha database provided in this package we have created a low-footprint matrix to examplify the shaman workflow. We included 4.6 million contacts from ELA K562 dataset covering the hoxd locus (chr2:175e06-178e06) and convergent CTCF regions. Processing the complete matrix from this study requires downloading the full contact list and regenerating the reshuffled matrix.

shaman_get_test_track_db()