All functions
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Repexpr
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Repexpr |
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addCounts()
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Count number of reads per interval and cell barcode |
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calcBackground()
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Genes should be curated! |
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compCounts()
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Counts number of reads per interval and cell barcode |
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createScSet()
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Create new scSet object |
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export()
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Exports results from scSet |
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genes()
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Returns gene intervals from scSet |
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repnames()
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Returns transposable element families from scSet |
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scSet-class
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An S4 class to store genomic annotations and results of Repguide functions. |
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tes()
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Returns TE intervals from scSet |