plot an observed or expected hic map

shaman_gplot_map

shaman_gplot_map(points, interval_range = NA, rotate = TRUE,
  point_size = 0.1, add_axis = TRUE)

Arguments

points	A dataframe containing the points (start1, start2).
rotate	Binary flag, indicating if the plot should be rotated by 45 degrees.
point_size	Cex size of the points in the plot.
add_axis	Binary flag, indicating if axis should be added to plot.

Value

gplot containing the map

Details

Plots hic contact matrix.

Examples

#Set misha db to test
gsetroot(shaman::shaman_get_test_track_db())
points <- gextract("hic_obs", gintervals.2d(2, 176e06, 177e06, 2, 176e06, 177e06))
shaman_gplot_map(points)