Returns transposable element families from guideSet

Retrieves all available families in the provided guideSet that match defined characteristics.

repnames(guideSet, pattern = NULL, fixed = FALSE)

Arguments

guideSet	guideSet object to query.
pattern	Regular expression. Returns only families that match pattern.
fixed	Logical. If TRUE, pattern is matched as is.

Value

Character vector.

See also

createGuideSet()

Examples

# NOT RUN {
gs <- createGuideSet(genome = Hsapiens, tes = te_annotation_df)
families <- repnames(gs, pattern = 'LTR12') # returns all families containing 'LTR12' in their name.

# Using a pattern not found in guideSet will suggest similar hits, e.g.:
repnames(gs, pattern = 'LTR5HS')
# }