An S4 class to store genomic annotations and results of Repguide functions. — guideSet-class • Repguide

An S4 class to store genomic annotations and results of Repguide functions.

Slots

genome: BSgenome object.
tes: GRanges object
cis: GRanges object
refdir: Character
tempdir: Character
targets: GRanges object
blacklist: GRanges object
whitelist: GRanges object
plots: List
guide_length: Integer
families: Character
PAM: Character
kmers: GRanges
alignments: DNAStringSetList
consensus: DNAStringSet
combinations: Data.frame
calls: List
.n_cores: Integer
.seed: Integer